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Listar Artículos (Ciencias de la Computación e Inteligencia Artificial) por autor "Romero Campero, Francisco José"
Mostrando ítems 1-20 de 24
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Artículo
A computational study of liposome logic: towards cellular computing from the bottom up
Smaldon, James; Romero Campero, Francisco José; Fernández Trillo, Francisco; Gheorghe, Marian; Alexander, Cameron; Krasnogor, Natalio (Springer, 2010)In this paper we propose a new bottom-up approach to cellular computing, in which computational chemical processes are ...
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A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1
Es, Sam W. van; Muñoz Gasca, Aitor; Romero Campero, Francisco José; González Grandío, Eduardo; Reyes, Pedro de los; Tarancón, Carlos; Dijk, Aalt D.J. van; Esse, Wilma van; Angenent, Gerco C.; Immink, Richard; Cubas, Pilar (Cold Spring Harbor Laboratory, 2020)The control of branch outgrowth is critical for plant fitness, stress resilience and crop yield. The Arabidopsis thaliana ...
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A Model of the Quorum Sensing System in Vibrio fischeri Using P Systems
Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (MIT Press, 2008)Quorum sensing is a cell density dependent gene regulation system that allows an entire population of bacterial cells to ...
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A polynomial alternative to unbounded environment for tissue P systems with cell division
Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Rius Font, Miquel; Romero Campero, Francisco José (Taylor and Francis, 2013)The standard definition of tissue P systems includes a special alphabet whose elements are assumed to appear in the initial ...
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A proxitome-RNA-capture approach reveals that processing bodies repress co-regulated hub genes
Liu, Chen; Mentzelopoulou, Andriani; Hatzianestis, Ioannis H.; Tzagkarakis, Epameinondas; Skaltsogiannis, Vasileios; Ma, Xuemin; Michalopoulou, Vassiliki A.; Romero Campero, Francisco José; Romero Losada, Ana Belén; Sarris, Panagiotis F.; Marhavy, Peter; Bolter, Bettina; Kanterakis, Alexandros; Gutiérrez Beltrán, Emilio; Moschou, Panagiotis N. (American Society of Plant Biologists, 2023-11-16)Cellular condensates are usually ribonucleoprotein assemblies with liquid- or solid-like properties. Because these subcellular ...
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A uniform solution to SAT using membrane creation
Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Elsevier, 2007)In living cells, new membranes are produced basically through two processes: mitosis and autopoiesis. These two processes have ...
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An Efficient Family of P Systems for Packing Items into Bins
Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Graz University of Technology, Institut für Informationssysteme und Computer Medie, 2004) -
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Cellular modelling using P systems and process algebra.
Romero Campero, Francisco José; Gheorghe, Marian; Ciobanu, Gabriel; Auld, John M.; Pérez Jiménez, Mario de Jesús (Taylor and Francis Online, 2007)In this paper various molecular chemical interactions are modelled under different computational paradigms. P systems and ...
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Changes at a Critical Branchpoint in the Anthocyanin Biosynthetic Pathway Underlie the Blue to Orange Flower Color Transition in Lysimachia arvensis
Sánchez Cabrera, Mercedes; Jiménez López, Francisco Javier; Narbona, Eduardo; Arista Palmero, Montserrat; Ortiz Ballesteros, Pedro Luis; Romero Campero, Francisco José; Ramanauskas, Karolis; Igic, Boris; Fuller, Amelia A.; Whittall, Justen B. (Frontiers Media, 2021)Anthocyanins are the primary pigments contributing to the variety of flower colors among angiosperms and are considered ...
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Computational efficiency of dissolution rules in membrane systems
Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (Taylor and Francis, 2006)Trading (in polynomial time) space for time in the framework of membrane systems is not sufficient to efficiently solve ...
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Deterministic and stochastic P systems for modelling cellular processes
Gheorghe, Marian; Manca, Vincenzo; Romero Campero, Francisco José (Springer, 2010)This paper presents two approaches based on metabolic and stochastic P systems, together with their associated analysis methods, for modelling biological sys- tems and illustrates their use through two case studies.
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Evolution of photoperiod sensing in plants and algae
Serrano Bueno, Gloria; Romero Campero, Francisco José; Lucas Reina, Eva; Romero Rodríguez, José María; Valverde, Federico (Elsevier, 2017)Measuring day length confers a strong fitness improvement to photosynthetic organisms as it allows them to anticipate ...
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Evolving cell models for systems and synthetic biology
Cao, Hongqing; Romero Campero, Francisco José; Heeb, Stephan; Cámara, Miguel; Krasnogor, Natalio (Springer, 2010)This paper proposes a new methodology for the automated design of cell models for systems and synthetic biology. Our ...
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Artículo
H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity
Zhou, Yue; Romero Campero, Francisco José; Gómez Zambrano, Ángeles; Turck, Franziska; Calonje Macaya, Mirian (BioMed Central, 2017)Background: Polycomb group complexes PRC1 and PRC2 repress gene expression at the chromatin level in eukaryotes. The ...
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How to express tumours using membrane systems
Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (ELSEVIER SCIENCE INC, 2007)In this paper we discuss the potential usefulness of membrane systems as tools for modelling tumours. The approach is ...
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Modelling gene expression control using P systems: The Lac Operon, a case study
Romero Campero, Francisco José; Pérez Jiménez, Mario de Jesús (Elsevier, 2008)In this paper P systems are used as a formal framework for the specification and simulation of biological systems. In ...
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Modular Assembly of Cell Systems Biology Models Using P Systems
Romero Campero, Francisco José; Twycross, Jamie; Bennett, Malcolm; Cámara, Miguel; Krasnogor, Natalio (World Scientific, 2009)In this paper we propose an extension of the modelling framework based on P systems which explicitly includes modularity. ...
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On the efficiency of cell-like and tissue-like recognizing membrane systems
Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (Wiley, 2009)Cell-like recognizing membrane systems are computational devices in the framework of membrane computing inspired from the ...
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Role of a cryptic tRNA gene operon in survival under translational stress
Santamaría Gómez, Javier; Rubio, Miguel Ángel; López Igual, Rocío; Romero Losada, Ana Belén; Delgado Chaves, Fernando M.; Bru Martínez, Roque; Romero Campero, Francisco José; Herrero Moreno, Antonia; Ibba, Michael; Ochoa de Alda, Jesús A. G.; Luque Romero, Ignacio (Oxford Academic, 2021-08-11)As compared to eukaryotes, bacteria have a reduced tRNA gene set encoding between 30 and 220 tR-NAs. Although in most ...
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Artículo
Simulating FAS-induced apoptosis by using P systems
Cheruku, Smitha; Paun, Andrei; Romero Campero, Francisco José; Pérez Jiménez, Mario de Jesús; Ibarra, Óscar H. (Taylor and Francis Online, 2007)In contrast to differential equations, P systems are an unconven- tional model of computation which takes into consideration ...