Perfil del autor: Romero Campero, Francisco José
Datos institucionales
Nombre | Romero Campero, Francisco José |
Departamento | Ciencias de la Computación e Inteligencia Artificial |
Área de conocimiento | Ciencia de la Computación e Inteligencia Artificial |
Categoría profesional | Profesor Titular de Universidad |
Correo electrónico | Solicitar |
Estadísticas
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Nº publicaciones
82
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Nº visitas
9083
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Nº descargas
12871
Publicaciones |
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Tesis Doctoral
Multi-omics characterization of the responses to seasonal variations in diel cycles in the marine picoeukaryote ostreococcus tauri
(2024)
Earth tilted rotation and translation around the Sun produce one of the most pervasive periodic environmental signals on ... |
Artículo
A proxitome-RNA-capture approach reveals that processing bodies repress co-regulated hub genes
(American Society of Plant Biologists, 2023)
Cellular condensates are usually ribonucleoprotein assemblies with liquid- or solid-like properties. Because these subcellular ... |
Tesis Doctoral
Control del reloj circadiano por la señal fotoperiódica en plantas
(2022)
Los organismos fotosintéticos son muy eficientes en la adaptación de su desarrollo a las condiciones ambientales. Para ... |
Artículo
ALGAEFUN with MARACAS, microALGAE FUNctional enrichment tool for MicroAlgae RnA-seq and Chip-seq AnalysiS
(BMC, 2022)
Background Microalgae are emerging as promising sustainable sources for biofuels, biostimulants in agriculture, soil ... |
Artículo
Transcriptomic and Metabolomic Response to High Light in the Charophyte Alga Klebsormidium nitens
(Frontiers Media, 2022)
The characterization of the molecular mechanisms, such as high light irradiance resistance, that allowed plant terrestralization ... |
Artículo
Role of a cryptic tRNA gene operon in survival under translational stress
(Oxford Academic, 2021)
As compared to eukaryotes, bacteria have a reduced tRNA gene set encoding between 30 and 220 tR-NAs. Although in most ... |
Artículo
H2AK121ub in Arabidopsis associates with a less accessible chromatin state at transcriptional regulation hotspots
(Springer Nature, 2021)
Although it is well established that the Polycomb Group (PcG) complexes maintain gene repression through the incorporation ... |
Artículo
A chloroplast redox relay adapts plastid metabolism to light and affects cytosolic protein quality control
(American Society of Plant Biologists, 2021)
In chloroplasts, thiol-dependent redox regulation is linked to light since the disulfide reductase activity of thioredoxins ... |
Artículo
Changes at a Critical Branchpoint in the Anthocyanin Biosynthetic Pathway Underlie the Blue to Orange Flower Color Transition in Lysimachia arvensis
(Frontiers Media, 2021)
Anthocyanins are the primary pigments contributing to the variety of flower colors among angiosperms and are considered ... |
Artículo
Unveiling the underlying molecular basis of astaxanthin accumulation in Haematococcus through integrative metabolomic-transcriptomic analysis
(Elsevier, 2021)
Astaxanthin is a valuable and highly demanded ketocarotenoid pigment, for which the chlorophycean microalga Haematococcus ... |
Artículo
A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1
(Cold Spring Harbor Laboratory, 2020)
The control of branch outgrowth is critical for plant fitness, stress resilience and crop yield. The Arabidopsis thaliana ... |
Artículo
Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium
(BMC, 2019)
Background The orange pigmentation of the agar cultures of many Fusarium species is due to the production of carotenoids, ... |
Artículo
Evolution of photoperiod sensing in plants and algae
(Elsevier, 2017)
Measuring day length confers a strong fitness improvement to photosynthetic organisms as it allows them to anticipate ... |
Artículo
The Arabidopsis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B, and C Impact Gene Networks throughout All Stages of Plant Development
(American Society of Plant Biologists, 2017)
Polycomb Group regulation in Arabidopsis (Arabidopsis thaliana) is required to maintain cell differentiation and allow ... |
Artículo
Evolutionary Analysis of DELLA-Associated Transcriptional Networks
(Frontiers Media, 2017)
DELLA proteins are transcriptional regulators present in all land plants which have been shown to modulate the activity ... |
Artículo
H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity
(BioMed Central, 2017)
Background: Polycomb group complexes PRC1 and PRC2 repress gene expression at the chromatin level in eukaryotes. The ... |
Artículo
Evolution of Daily Gene Co-expression Patterns from Algae to Plants
(Frontiers Media, 2017)
Daily rhythms play a key role in transcriptome regulation in plants and microalgae orchestrating responses that, among ... |
Artículo
ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage
(BioMed Central, 2016)
Background Chlamydomonas reinhardtii is the model organism that serves as a reference for studies in algal genomics and ... |
Artículo
New challenges in microalgae biotechnology
(Elsevier, 2016)
Photosynthetic protists, also called microalgae, have been systematically studied for more than a century. However, only ... |
Capítulo de Libro
Evolution of the Flowering Pathways
(Springer, 2016)
Flowering plants are some of the most successful organisms on Earth, particularly those used in agriculture due to the ... |
Artículo
An evolutionarily conserved DOF-CONSTANS module controls plant photoperiodic signaling
(American Society of Plant Biologists, 2015)
The response to daylength is a crucial process that evolved very early in plant evolution, entitling the early green ... |
Artículo
The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor
(American Society for Microbiology, 2015)
The growth of the soil bacterium Pseudomonas putida KT2440 on glycerol as the sole carbon source is characterized by a ... |
Capítulo de Libro
Coupling Between Messenger RNA Synthesis and Degradation during Genome Expression
(Fidetia, 2015)
Genome expression involves the synthesis of messenger RNA (mRNA), a short lived molecule whose translation directs the ... |
Capítulo de Libro
Infobiotics Workbench: A P Systems Based Tool for Systems and Synthetic Biology
(Springer, 2014)
This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel spatial ... |
Artículo
Photoperiodic control of carbon distribution during the floral transition in Arabidopsis
(American Society of Plant Biologists, 2014)
Flowering is a crucial process that demands substantial resources. Carbon metabolism must be coordinated with development ... |
Artículo
A contribution to the study of plant development evolution based on gene co-expression networks
(Frontiers media, 2013)
Phototrophic eukaryotes are among the most successful organisms on Earth due to their unparalleled efficiency at capturing ... |
Artículo
A polynomial alternative to unbounded environment for tissue P systems with cell division
(Taylor and Francis, 2013)
The standard definition of tissue P systems includes a special alphabet whose elements are assumed to appear in the initial ... |
Ponencia
Heterotic Computing Examples with Optics, Bacteria, and Chemicals
(Springer, 2012)
Unconventional computers can perform embodied computation that can directly exploit the natural dynamics of the substrate. ... |
Ponencia
P Systems as a Modeling Framework for Molecular Systems Biology
(Huazhong University of Science and Technology, 2012)
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Libro |
Ponencia
The Role of the Environment in Tissue P Systems with Cell Division
(Fénix Editora, 2012)
Classical tissue P systems with cell division have a special alphabet whose elements appear at the initial configuration ... |
Libro |
Ponencia
Membrane Computing (Tutorial)
(Springer, 2011)
The aim of the tutorial is to give a general overview of the Membrane Computing paradigm [2,5]. Membrane Computing is a ... |
Artículo
The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology
(Oxford Academic, 2011)
The Infobiotics Workbench is an integrated software suite incorporating model specification, simulation, parameter optimization ... |
Artículo
A computational study of liposome logic: towards cellular computing from the bottom up
(Springer, 2010)
In this paper we propose a new bottom-up approach to cellular computing, in which computational chemical processes are ... |
Artículo
Evolving cell models for systems and synthetic biology
(Springer, 2010)
This paper proposes a new methodology for the automated design of cell models for systems and synthetic biology. Our ... |
Artículo
Deterministic and stochastic P systems for modelling cellular processes
(Springer, 2010)
This paper presents two approaches based on metabolic and stochastic P systems, together with their associated analysis methods, for modelling biological sys- tems and illustrates their use through two case studies. |
Artículo
On the efficiency of cell-like and tissue-like recognizing membrane systems
(Wiley, 2009)
Cell-like recognizing membrane systems are computational devices in the framework of membrane computing inspired from the ... |
Ponencia
An Approach to the Engineering of Cellular Models Based on P Systems
(Springer, 2009)
Living cells assembled into colonies or tissues communicate using complex systems. These systems consist in the interaction ... |
Artículo
Modular Assembly of Cell Systems Biology Models Using P Systems
(World Scientific, 2009)
In this paper we propose an extension of the modelling framework based on P systems which explicitly includes modularity. ... |
Tesis Doctoral
P systems, a computational modelling framework for systems biology
(2008)
LOS PROGRAMAS INFORMÁTICOS QUE MODELIZAN CÉLULAS FACILITARÁN EL TRABAJO DE LOS BIÓLOGOS Se basa en hacer modelos de células, ... |
Ponencia
Membrane Computing as a Modeling Framework. Cellular Systems Case Studies
(Springer, 2008)
Membrane computing is a branch of natural computing aiming to abstract computing models from the structure and functioning ... |
Ponencia
A systems analysis of the AHL Quorum Sensing system in Pseudomonas aeruginosa
(European Science Foundation (ESF), 2008)
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Artículo
Modelling gene expression control using P systems: The Lac Operon, a case study
(Elsevier, 2008)
In this paper P systems are used as a formal framework for the specification and simulation of biological systems. In ... |
Ponencia
A Multiscale Modeling Framework Based on P Systems
(Springer, 2008)
Cellular systems present a highly complex organization at different scales including the molecular, cellular and colony ... |
Artículo
A Model of the Quorum Sensing System in Vibrio fischeri Using P Systems
(MIT Press, 2008)
Quorum sensing is a cell density dependent gene regulation system that allows an entire population of bacterial cells to ... |
Ponencia
Structure and parameter estimation for cell systems biology models
(ACM Digital Library, 2008)
In this work we present a new methodology for structure and parameter estimation in cell systems biology modelling. Our ... |
Tesis Doctoral
P systems, a computacional modelling framework for systems biology
(2007)
"Los programas informáticos que modelizan células facilitarán el trabajo de los biólogos. Se basa en hacer modelos de ... |
Artículo
Cellular modelling using P systems and process algebra.
(Taylor and Francis Online, 2007)
In this paper various molecular chemical interactions are modelled under different computational paradigms. P systems and ... |
Ponencia
Simulating Apoptosis Using Discrete Methods: a Membrane System and a Stochastic Approach
(2007)
Membrane Systems provide an intriguing method for modeling biological systems at a molecular level. The hierarchical ... |
Artículo
A uniform solution to SAT using membrane creation
(Elsevier, 2007)
In living cells, new membranes are produced basically through two processes: mitosis and autopoiesis. These two processes have ... |
Ponencia
A Hybrid Approach to Modeling Biological Systems
(Springer, 2007)
This paper investigates a hybrid approach to modeling molecular interactions in biology. P systems, π-calculus, and Petri ... |
Artículo
Simulating FAS-induced apoptosis by using P systems
(Taylor and Francis Online, 2007)
In contrast to differential equations, P systems are an unconven- tional model of computation which takes into consideration ... |
Artículo
How to express tumours using membrane systems
(ELSEVIER SCIENCE INC, 2007)
In this paper we discuss the potential usefulness of membrane systems as tools for modelling tumours. The approach is ... |
Artículo
Computational efficiency of dissolution rules in membrane systems
(Taylor and Francis, 2006)
Trading (in polynomial time) space for time in the framework of membrane systems is not sufficient to efficiently solve ... |
Capítulo de Libro
Towards Probabilistic Model Checking on P Systems Using PRISM
(Springer, 2006)
This paper presents the use of P systems and π-calculus to model interacting molecular entities and how they are translated into a probabilistic and symbolic model checker called PRISM. |
Capítulo de Libro
Modeling Signal Transduction Using P Systems
(Springer, 2006)
Cellular signalling pathways are fundamental to the control and regulation of cell behavior. Understanding of biosignalling ... |
Ponencia
A Membrane Computing View on Tumours
(2006)
In this paper we discuss about the potential usefulness of P systems as natural tools for modelling tumours. This is done ... |
Capítulo de Libro
On P Systems as a Modelling Tool for Biological Systems
(Springer, 2006)
We introduce a variant of P systems where rules have associated a real number providing a measure for the “intrinsic ... |
Capítulo de Libro
A Linear Solution for QSAT with Membrane Creation
(Springer, 2006)
The usefulness of P systems with membrane creation for solving NP problems has been previously proved (see [2, 3]), but, ... |
Capítulo de Libro
On the Power of Dissolution in P Systems with Active Membranes
(Springer, 2006)
In this paper we study membrane dissolution rules in the framework of P systems with active membranes but without using ... |
Capítulo de Libro
A Modeling Approach Based on P Systems with Bounded Parallelism
(Springer, 2006)
This paper presents a general framework for modelling with membrane systems that is based on a computational paradigm ... |
Ponencia
Cell-like and Tissue-like Membrane Systems as Recognizer Devices
(Rosillo's S.L., 2006)
Most of the variants of membrane systems found in the literature are generally thought as generating devices. In this paper ... |
Ponencia
Towards a P Systems Pseudomonas Quorum Sensing Model
(Springer, 2006)
Pseudomonas aeruginosa is an opportunistic bacterium that exploits quorum sensing communication to synchronize individuals ... |
Ponencia
Stochastic Approaches in P Systems for Simulating Biological Systems
(Fénix Editora, 2006)
Different stochastic strategies for modeling biological systems with P systems are reviewed in this paper, such as the ... |
Capítulo de Libro
P Systems, a New Computational Modelling Tool for Systems Biology
(Springer, 2006)
In this paper we present P systems as a reliable computa- tional modelling tool for Systems Biology that takes into account ... |
Capítulo de Libro
Characterizing tractability by cell-like membrane systems
(WORLD SCIENTIFIC PUBL CO PTE LTD, 2006)
In this paper we present a polynomial complexity class in the framework of membrane computing. In this context, and using ... |
Capítulo de Libro
Attacking the Common Algorithmic Problem by Recognizer P Systems
(Springer, 2005)
Many NP-complete problems can be viewed as special cases of the Common Algorithmic Problem (CAP). In a precise sense, ... |
Ponencia
Modelling Vibrio fischeri’s behaviour Using P Systems
(2005)
Quorum sensing is a cell density dependent gene regulation system that allows an entire population of bacterial cells to ... |
Capítulo de Libro
Trading Polarization for Bi-stable Catalysts in P Systems with Active Membranes
(Springer, 2005)
In the last time, several efforts have been made in order to remove polarizations of membranes from P systems with active ... |
Ponencia
A Tool for Using the SBML Format to Represent P Systems which Model Biological Reaction Networks
(Fénix Editora, 2005)
In this paper we present a software tool to represent P systems modelling signalling networks of biochemical reactions ... |
Ponencia
Solving SAT with membrane creation
(University of Amsterdam, 2005)
Membrane Computing is a branch of Natural Computing which starts from the assumption that the processes taking place in ... |
Ponencia
Characterizing Tractability with Membrane Creation
(IEEE Computer Society, 2005)
This paper analyzes the role that membrane dissolution rules play in order to characterize (in the framework of recognizer ... |
Ponencia
Modelling EGFR signalling cascade using continuous membrane systems
(2005)
The complexity of networks of biological signalling pathways is such that the development of simplifying models is essential ... |
Capítulo de Libro
P Systems with Active Membranes, Without Polarizations and Without Dissolution: A Characterization of P
(Springer, 2005)
We study the computational efficiency of recognizer P systems with active membranes without polarizations and without ... |
Capítulo de Libro
A Study of the Robustness of the EGFR Signalling Cascade Using Continuous Membrane Systems
(Springer, 2005)
Many approaches to anticancer treatment have had a limited success. A fundamental hurdle to cancer therapy is the robustness ... |
Ponencia
On P Systems with Bounded Parallelism
(IEEE Computer Society, 2005)
A framework that describes the evolution of P systems with bounded parallelism is de ned by introducing basic formal ... |
Capítulo de Libro
A Linear Solution of Subset Sum Problem by Using Membrane Creation
(Springer, 2005)
Membrane Computing is a branch of Natural Computing which starts from the assumption that the processes taking place in ... |
Ponencia
Simulating Avascular Tumors with Membrane Systems
(Fénix Editora, 2005)
Tumor growth has received a considerable attention by the scientific community. In the earliest stages of development, ... |
Ponencia
A CLIPS Simulator for Recognizer P Systems with Active Membranes
(Fénix Editora, 2004)
In this paper we propose a new way to represent recognizer P systems with active membranes based on Production Systems ... |
Artículo
An Efficient Family of P Systems for Packing Items into Bins
(Graz University of Technology, Institut für Informationssysteme und Computer Medie, 2004)
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Ponencia
Solving the BINPACKING Problem by Recognizer P Systems with Active Membranes
(Fénix Editora, 2004)
In this paper we present an e®ective solution to the BINPACKING problem using a family of recognizer P systems with active ... |