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Analysing Gene Networks with PDP Systems. Arabidopsis thaliana, a Case Study


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Opened Access Analysing Gene Networks with PDP Systems. Arabidopsis thaliana, a Case Study
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Author: Valencia Cabrera, Luis
García Quismondo, Manuel
Pérez Jiménez, Mario de Jesús
Su, Yansen
Yu, Hui
Pan, Linqiang
Department: Universidad de Sevilla. Departamento de Ciencias de la Computación e Inteligencia Artificial
Date: 2013
Published in: Proceedings of the Eleventh Brainstorming Week on Membrane Computing, 257-272. Sevilla, E.T.S. de Ingeniería Informática, 4-8 de Febrero, 2013,
ISBN/ISSN: 978-84-940691-9-2
Document type: Presentation
Abstract: Gene Regulatory Networks (GRNs) are a useful tool for biologists to understand the interactions among genes in living organisms. A special kind of GRNs known as Logic Networks (LNs) has been recently introduced. These networks consider that the state of one or more genes can in uence another one. In a previous work, we proposed a Membrane Computing model which simulates the dynamics of LNs by drawing on the improved LAPP algorithm. In this paper we provide a case study for our LN model on a network which regulates the circadian rhythms of long{term studied plant Arabidopsis thaliana. We outline the software tools employed and propose a methodology for analysing LNs on our Membrane Computing model. At the end of the paper, some conclusions and future work are included.
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