dc.creator | Shahinpei, Azadeh | es |
dc.creator | Amoozegar, Mohammad Ali | es |
dc.creator | Mirfeizi, Leila | es |
dc.creator | Nikou, Mahdi Moshtaghi | es |
dc.creator | Ventosa Ucero, Antonio | es |
dc.creator | Sánchez-Porro Álvarez, Cristina | es |
dc.date.accessioned | 2020-04-30T10:18:34Z | |
dc.date.available | 2020-04-30T10:18:34Z | |
dc.date.issued | 2020 | |
dc.identifier.citation | Shahinpei, A., Amoozegar, M.A., Mirfeizi, L., Nikou, M.M., Ventosa Ucero, A. y Sánchez-Porro Álvarez, C. (2020). Taxogenomics of the Genus Cyclobacterium: Cyclobacterium xiamenense and Cyclobacterium halophilum as Synonyms and Description of Cyclobacterium plantarum sp. nov.. Microorganisms, 8 (4, art.610), 1-16. | |
dc.identifier.issn | 2076-2607 | es |
dc.identifier.uri | https://hdl.handle.net/11441/96029 | |
dc.description.abstract | The genus Cyclobacterium belongs to the phylum Bacteroidetes and includes eight species. Our study, based on the genomic parameters in silico DNA-DNA hybridization (GGDC), average nucleotide identity (OrthoANI), and average amino acid identity (AAI), confirmed that all current species of Cyclobacterium belong to this genus and constitute a coherent phylogenomic group, but with species forming two separate branches. In addition, the genome-based analyses revealed that Cyclobacterium xiamenense and Cyclobacterium halophilum are members of the same species. Besides, we carried out a taxonomic characterization of the new strain GBPx2T, isolated from the halophytic plant Salicornia sp. Analysis of its 16S rRNA gene sequence showed the highest sequence similarity (97.5%) to Cyclobacterium lianum HY9T. Percentages of GGDC and OrthoANI between strain GBPx2T and species of the genus Cyclobacterium were lower than the threshold value for species delineation. The DNA G+C content was 43.0 mol%. The polar lipids included phosphatidylethanolamine as well as one unidentified phospholipid and four unidentified lipids, and its major cellular fatty acids were iso-C15:0 and summed feature 3 (C16:1ω7c and/or iso-C15:0 2-OH). The only quinone present was menaquinone 7. Based on a combination of phenotypic, chemotaxonomic, and phylogenomic features, the GBPx2T strain represents a novel species of the genus Cyclobacterium, for which the name Cyclobacterium plantarum sp. nov. is proposed. The type strain of Cyclobacterium plantarum is GBPx2T (= IBRC-M 10634T = LMG 28551T). | es |
dc.description.sponsorship | España, Junta de Andalucía (Spain) (BIO-213, US-1263771) | es |
dc.description.sponsorship | España, MINECO CGL2017-83385-P | es |
dc.format | application/pdf | es |
dc.format.extent | 16 p. | es |
dc.language.iso | eng | es |
dc.publisher | MDPI | es |
dc.relation.ispartof | Microorganisms, 8 (4, art.610), 1-16. | |
dc.rights | Attribution-NonCommercial-NoDerivatives 4.0 Internacional | * |
dc.rights.uri | http://creativecommons.org/licenses/by-nc-nd/4.0/ | * |
dc.subject | Cyclobacterium | es |
dc.subject | Cyclobacterium halophilum | es |
dc.subject | Cyclobacterium plantarum | es |
dc.subject | Cyclobacterium xiamenense | es |
dc.subject | bacterial taxonomy | es |
dc.subject | halophilic bacteria | es |
dc.subject | new species | es |
dc.subject | taxogenomics | es |
dc.title | Taxogenomics of the Genus Cyclobacterium: Cyclobacterium xiamenense and Cyclobacterium halophilum as Synonyms and Description of Cyclobacterium plantarum sp. nov. | es |
dc.type | info:eu-repo/semantics/article | es |
dc.type.version | info:eu-repo/semantics/publishedVersion | es |
dc.rights.accessRights | info:eu-repo/semantics/openAccess | es |
dc.contributor.affiliation | Universidad de Sevilla. Departamento de Microbiología y Parasitología | es |
dc.relation.projectID | CGL2017-83385-P | es |
dc.relation.projectID | BIO-213, US-1263771 | es |
dc.relation.publisherversion | https://doi.org/10.3390/microorganisms8040610 | es |
dc.identifier.doi | 10.3390/microorganisms8040610 | es |
dc.journaltitle | Microorganisms | es |
dc.publication.volumen | 8 | es |
dc.publication.issue | 4, art.610 | es |
dc.publication.initialPage | 1 | es |
dc.publication.endPage | 16 | es |
dc.contributor.funder | Ministerio de Economía y Competitividad (MINECO). España | es |
dc.contributor.funder | Junta de Andalucía | es |