Ponencia
Metabolic Algorithm with Time-varying Reaction Maps
Autor/es | Bianco, Luca
Fontana, Federico Manca, Vincenzo |
Fecha de publicación | 2005 |
Fecha de depósito | 2016-02-25 |
Publicado en |
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ISBN/ISSN | 84-609-6771-9 |
Resumen | A symbolic-based approach to modelling biochemical processes and cellular
dynamics is likely to turn useful in computational biology, where attempts to represent
the cell as a huge, complex dynamic system must trade with ... A symbolic-based approach to modelling biochemical processes and cellular dynamics is likely to turn useful in computational biology, where attempts to represent the cell as a huge, complex dynamic system must trade with the linguistic nature of the DNA and the individual behavior of the organelles living within. The early version of the metabolic algorithm gave a first answer to the problem of representing oscillatory biological phenomena, so far being treated with traditional (differential) mathematical tools, in terms of rewriting systems. We are now working on a further version of this algorithm, in which the rule application is tuned by reaction maps depending on the specific phenomenon under consideration. Successful simulations of the Brusselator, the Lotka-Volterra population dynamics and the PKC activation foster potential applications of the algorithm in systems biology. |
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