NombreRomero Campero, Francisco José
DepartamentoCiencias de la Computación e Inteligencia Artificial
Área de conocimientoCiencia de la Computación e Inteligencia Artificial
Categoría profesionalProfesor Titular de Universidad
Correo electrónicoSolicitar
           
  • Nº publicaciones

    80

  • Nº visitas

    7413

  • Nº descargas

    11179


 

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A proxitome-RNA-capture approach reveals that processing bodies repress co-regulated hub genes

Liu, Chen; Mentzelopoulou, Andriani; Hatzianestis, Ioannis H.; Tzagkarakis, Epameinondas; Skaltsogiannis, Vasileios; Ma, Xuemin; Michalopoulou, Vassiliki A.; Romero Campero, Francisco José; Romero Losada, Ana Belén; Sarris, Panagiotis F.; Marhavy, Peter; Bolter, Bettina; Kanterakis, Alexandros; Gutiérrez Beltrán, Emilio; Moschou, Panagiotis N. (American Society of Plant Biologists, 2023)
Cellular condensates are usually ribonucleoprotein assemblies with liquid- or solid-like properties. Because these subcellular ...
Tesis Doctoral
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Control del reloj circadiano por la señal fotoperiódica en plantas

Reyes Rodríguez, Pedro de los; Romero Rodríguez, José María; Romero Campero, Francisco José; Valverde Albacete, Federico (2022)
Los organismos fotosintéticos son muy eficientes en la adaptación de su desarrollo a las condiciones ambientales. Para ...
Artículo
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ALGAEFUN with MARACAS, microALGAE FUNctional enrichment tool for MicroAlgae RnA-seq and Chip-seq AnalysiS

Romero Losada, Ana Belén; Arvanitidou, Christina; Reyes Rodríguez, Pedro de los; García González, Mercedes; Romero Campero, Francisco José (BMC, 2022)
Background Microalgae are emerging as promising sustainable sources for biofuels, biostimulants in agriculture, soil ...
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Transcriptomic and Metabolomic Response to High Light in the Charophyte Alga Klebsormidium nitens

Serrano Pérez, Emma; Romero Losada, Ana Belén; Morales Pineda, María; García Gómez, María Elena; Couso Liáñez, Inmaculada Concepción; García González, Mercedes; Romero Campero, Francisco José (Frontiers Media, 2022)
The characterization of the molecular mechanisms, such as high light irradiance resistance, that allowed plant terrestralization ...
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Role of a cryptic tRNA gene operon in survival under translational stress

Santamaría Gómez, Javier; Rubio, Miguel Ángel; López Igual, Rocío; Romero Losada, Ana Belén; Delgado Chaves, Fernando M.; Bru Martínez, Roque; Romero Campero, Francisco José; Herrero Moreno, Antonia; Ibba, Michael; Ochoa de Alda, Jesús A. G.; Luque Romero, Ignacio (Oxford Academic, 2021)
As compared to eukaryotes, bacteria have a reduced tRNA gene set encoding between 30 and 220 tR-NAs. Although in most ...
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H2AK121ub in Arabidopsis associates with a less accessible chromatin state at transcriptional regulation hotspots

Yin, Xiaochang; Romero Campero, Francisco José; Reyes Rodríguez, Pedro de los; Yan, Peng; Yang, Jing; Tian, Guangmei; Yang, Xiao Zeng; Mo, Xiaorong; Zhao, Shuangshuang; Calonje Macaya, Miriam; Zhou, Yue (Springer Nature, 2021)
Although it is well established that the Polycomb Group (PcG) complexes maintain gene repression through the incorporation ...
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A chloroplast redox relay adapts plastid metabolism to light and affects cytosolic protein quality control

Ojeda Servián, Valle; Jiménez López, Julia; Romero Campero, Francisco José; Cejudo Fernández, Francisco Javier; Pérez Ruiz, Juan Manuel (American Society of Plant Biologists, 2021)
In chloroplasts, thiol-dependent redox regulation is linked to light since the disulfide reductase activity of thioredoxins ...
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Changes at a Critical Branchpoint in the Anthocyanin Biosynthetic Pathway Underlie the Blue to Orange Flower Color Transition in Lysimachia arvensis

Sánchez Cabrera, Mercedes; Jiménez López, Francisco Javier; Narbona, Eduardo; Arista Palmero, Montserrat; Ortiz Ballesteros, Pedro Luis; Romero Campero, Francisco José; Ramanauskas, Karolis; Igic, Boris; Fuller, Amelia A.; Whittall, Justen B. (Frontiers Media, 2021)
Anthocyanins are the primary pigments contributing to the variety of flower colors among angiosperms and are considered ...
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Unveiling the underlying molecular basis of astaxanthin accumulation in Haematococcus through integrative metabolomic-transcriptomic analysis

Hoys Hernández, Cristina; Romero Losada, Ana Belén; Río, Esperanza del; Guerrero, Miguel G.; Romero Campero, Francisco José; García González, Mercedes (Elsevier, 2021)
Astaxanthin is a valuable and highly demanded ketocarotenoid pigment, for which the chlorophycean microalga Haematococcus ...
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A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1

Es, Sam W. van; Muñoz Gasca, Aitor; Romero Campero, Francisco José; González Grandío, Eduardo; Reyes, Pedro de los; Tarancón, Carlos; Dijk, Aalt D.J. van; Esse, Wilma van; Angenent, Gerco C.; Immink, Richard; Cubas, Pilar (Cold Spring Harbor Laboratory, 2020)
The control of branch outgrowth is critical for plant fitness, stress resilience and crop yield. The Arabidopsis thaliana ...
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Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium

Ruger Herreros, María Macarena; Parra Rivero, Obdulia; Pardo Medina, Javier; Romero Campero, Francisco José; Ávalos Cordero, Francisco Javier; Limón Mirón, María del Carmen (BMC, 2019)
Background The orange pigmentation of the agar cultures of many Fusarium species is due to the production of carotenoids, ...
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Evolution of photoperiod sensing in plants and algae

Serrano Bueno, Gloria; Romero Campero, Francisco José; Lucas Reina, Eva; Romero Rodríguez, José María; Valverde, Federico (Elsevier, 2017)
Measuring day length confers a strong fitness improvement to photosynthetic organisms as it allows them to anticipate ...
Artículo
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The Arabidopsis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B, and C Impact Gene Networks throughout All Stages of Plant Development

Merini, Wiam; Romero Campero, Francisco José; Gómez Zambrano, Ángeles; Zhou, Yue; Turck, Franziska; Calonje, Myriam (American Society of Plant Biologists, 2017)
Polycomb Group regulation in Arabidopsis (Arabidopsis thaliana) is required to maintain cell differentiation and allow ...
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Evolutionary Analysis of DELLA-Associated Transcriptional Networks

Briones Moreno, Asier; Hernández García, Jorge; Vargas Chávez, Carlos; Romero Campero, Francisco José; Romero Rodríguez, José María; Valverde Albacete, Federico; Blázquez, Miguel A. (Frontiers Media, 2017)
DELLA proteins are transcriptional regulators present in all land plants which have been shown to modulate the activity ...
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H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity

Zhou, Yue; Romero Campero, Francisco José; Gómez Zambrano, Ángeles; Turck, Franziska; Calonje Macaya, Mirian (BioMed Central, 2017)
Background: Polycomb group complexes PRC1 and PRC2 repress gene expression at the chromatin level in eukaryotes. The ...
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Evolution of Daily Gene Co-expression Patterns from Algae to Plants

Reyes, Pedro de los; Romero Campero, Francisco José; Ruiz Pérez, María Teresa; Valverde Albacete, Federico (Frontiers Media, 2017)
Daily rhythms play a key role in transcriptome regulation in plants and microalgae orchestrating responses that, among ...
Artículo
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ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage

Romero Campero, Francisco José; Pérez Hurtado de Mendoza, Ignacio; Lucas Reina, Eva; Valverde Albacete, Federico (BioMed Central, 2016)
Background Chlamydomonas reinhardtii is the model organism that serves as a reference for studies in algal genomics and ...
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New challenges in microalgae biotechnology

Valverde Albacete, Federico; Romero Campero, Francisco José; León, Ricardo; García Guerrero, Miguel; Serrano, Aurelio (Elsevier, 2016)
Photosynthetic protists, also called microalgae, have been systematically studied for more than a century. However, only ...
Capítulo de Libro
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Evolution of the Flowering Pathways

Lucas Reina, Eva; Ortiz Marchena, M Isabel; Romero Campero, Francisco José; Calonje, Myriam; Romero, José M.; Valverde, Federico; Lüttge, Ulrich; Cánovas, Francisco M.; Matyssek, Rainer (Springer, 2016)
Flowering plants are some of the most successful organisms on Earth, particularly those used in agriculture due to the ...
Artículo
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An evolutionarily conserved DOF-CONSTANS module controls plant photoperiodic signaling

Lucas Reina, Eva; Romero Campero, Francisco José; Romero, José M.; Valverde, Federico (American Society of Plant Biologists, 2015)
The response to daylength is a crucial process that evolved very early in plant evolution, entitling the early green ...
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The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor

Nikel, Pablo I.; Romero Campero, Francisco José; Zeidman, Joshua A.; Goñi Moreno, Ángel; Lorenzo, Víctor de (American Society for Microbiology, 2015)
The growth of the soil bacterium Pseudomonas putida KT2440 on glycerol as the sole carbon source is characterized by a ...
Capítulo de Libro
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Infobiotics Workbench: A P Systems Based Tool for Systems and Synthetic Biology

Blakes, Jonathan; Twycross, Jamie; Konur, Savas; Romero Campero, Francisco José; Krasnogor, Natalio; Gheorghe, Marian; Frisco, Pierluigi; Gheorghe, Marian; Pérez Jiménez, Mario de Jesús (Springer, 2014)
This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel spatial ...
Artículo
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Photoperiodic control of carbon distribution during the floral transition in Arabidopsis

Ortíz Marchena, M Isabel; Albi Rodríguez, Tomás; Lucas Reina, Eva; Said, Fátima E.; Romero Campero, Francisco José; Cano Ruiz, Beatriz; Ruiz, M. Teresa; Romero Rodríguez, José María; Valverde Albacete, Federico (American Society of Plant Biologists, 2014)
Flowering is a crucial process that demands substantial resources. Carbon metabolism must be coordinated with development ...
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A contribution to the study of plant development evolution based on gene co-expression networks

Romero Campero, Francisco José; Lucas Reina, Eva; Said, Fátima E.; Romero Rodríguez, José María; Valverde Albacete, Federico (Frontiers media, 2013)
Phototrophic eukaryotes are among the most successful organisms on Earth due to their unparalleled efficiency at capturing ...
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A polynomial alternative to unbounded environment for tissue P systems with cell division

Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Rius Font, Miquel; Romero Campero, Francisco José (Taylor and Francis, 2013)
The standard definition of tissue P systems includes a special alphabet whose elements are assumed to appear in the initial ...
Ponencia
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Heterotic Computing Examples with Optics, Bacteria, and Chemicals

Stepney, Susan; Abramsky, Samson; Bechmann, Matthias; Gorecki, Jerzy; Kendon, Viv; Naughton, Thomas J.; Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José; Sebald, Angelika (Springer, 2012)
Unconventional computers can perform embodied computation that can directly exploit the natural dynamics of the substrate. ...
Ponencia
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P Systems as a Modeling Framework for Molecular Systems Biology

Romero Campero, Francisco José; Pérez Jiménez, Mario de Jesús (Huazhong University of Science and Technology, 2012)
Libro
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Tenth Brainstorming Week on Membrane Computing Sevilla, January 30 – February 3, 2012 Volume I : RGNC REPORT 1/2012

Martínez del Amor, Miguel Ángel; Paun, Gheorghe; Pérez Hurtado de Mendoza, Ignacio; Romero Campero, Francisco José; Research Group on Natural Computing (Fénix Editora, 2012)
Ponencia
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The Role of the Environment in Tissue P Systems with Cell Division

Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Rius Font, Miquel; Romero Campero, Francisco José (Fénix Editora, 2012)
Classical tissue P systems with cell division have a special alphabet whose elements appear at the initial configuration ...
Libro
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Ninth Brainstorming Week on Membrane Computing, Sevilla, January 31 - February 4, 2011 : RGNC REPORT 1/2011

Martínez del Amor, Miguel Ángel; Paun, Gheorghe; Pérez Hurtado de Mendoza, Ignacio; Romero Campero, Francisco José; Valencia Cabrera, Luis; Research Group on Natural Computing (Fénix Editora, 2011)
Ponencia
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Membrane Computing (Tutorial)

Pérez Hurtado de Mendoza, Ignacio; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (Springer, 2011)
The aim of the tutorial is to give a general overview of the Membrane Computing paradigm [2,5]. Membrane Computing is a ...
Artículo
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The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology

Blakes, Jonathan; Twycross, Jamie; Romero Campero, Francisco José; Krasnogor, Natalio (Oxford Academic, 2011)
The Infobiotics Workbench is an integrated software suite incorporating model specification, simulation, parameter optimization ...
Artículo
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A computational study of liposome logic: towards cellular computing from the bottom up

Smaldon, James; Romero Campero, Francisco José; Fernández Trillo, Francisco; Gheorghe, Marian; Alexander, Cameron; Krasnogor, Natalio (Springer, 2010)
In this paper we propose a new bottom-up approach to cellular computing, in which computational chemical processes are ...
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Evolving cell models for systems and synthetic biology

Cao, Hongqing; Romero Campero, Francisco José; Heeb, Stephan; Cámara, Miguel; Krasnogor, Natalio (Springer, 2010)
This paper proposes a new methodology for the automated design of cell models for systems and synthetic biology. Our ...
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Deterministic and stochastic P systems for modelling cellular processes

Gheorghe, Marian; Manca, Vincenzo; Romero Campero, Francisco José (Springer, 2010)
This paper presents two approaches based on metabolic and stochastic P systems, together with their associated analysis methods, for modelling biological sys- tems and illustrates their use through two case studies.
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On the efficiency of cell-like and tissue-like recognizing membrane systems

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (Wiley, 2009)
Cell-like recognizing membrane systems are computational devices in the framework of membrane computing inspired from the ...
Ponencia
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An Approach to the Engineering of Cellular Models Based on P Systems

Romero Campero, Francisco José; Krasnogor, Natalio (Springer, 2009)
Living cells assembled into colonies or tissues communicate using complex systems. These systems consist in the interaction ...
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Modular Assembly of Cell Systems Biology Models Using P Systems

Romero Campero, Francisco José; Twycross, Jamie; Bennett, Malcolm; Cámara, Miguel; Krasnogor, Natalio (World Scientific, 2009)
In this paper we propose an extension of the modelling framework based on P systems which explicitly includes modularity. ...
Tesis Doctoral
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P systems, a computational modelling framework for systems biology

Romero Campero, Francisco José; Gheorghe, Marian; Pérez Jiménez, Mario de Jesús (2008)
LOS PROGRAMAS INFORMÁTICOS QUE MODELIZAN CÉLULAS FACILITARÁN EL TRABAJO DE LOS BIÓLOGOS Se basa en hacer modelos de células, ...
Ponencia
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Membrane Computing as a Modeling Framework. Cellular Systems Case Studies

Paun, Gheorghe; Romero Campero, Francisco José (Springer, 2008)
Membrane computing is a branch of natural computing aiming to abstract computing models from the structure and functioning ...
Ponencia
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A systems analysis of the AHL Quorum Sensing system in Pseudomonas aeruginosa

Romero Campero, Francisco José; Blakes, Jonathan; Camara, Miguel; Krasnogor, Natalio (European Science Foundation (ESF), 2008)
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Modelling gene expression control using P systems: The Lac Operon, a case study

Romero Campero, Francisco José; Pérez Jiménez, Mario de Jesús (Elsevier, 2008)
In this paper P systems are used as a formal framework for the specification and simulation of biological systems. In ...
Ponencia
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A Multiscale Modeling Framework Based on P Systems

Romero Campero, Francisco José; Twycross, Jamie; Cao, Hongqing; Blakes, Jonathan; Krasnogor, Natalio (Springer, 2008)
Cellular systems present a highly complex organization at different scales including the molecular, cellular and colony ...
Artículo
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A Model of the Quorum Sensing System in Vibrio fischeri Using P Systems

Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (MIT Press, 2008)
Quorum sensing is a cell density dependent gene regulation system that allows an entire population of bacterial cells to ...
Ponencia
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Structure and parameter estimation for cell systems biology models

Romero Campero, Francisco José; Cao, Hongqing; Cámara, Miguel; Krasnogor, Natalio (ACM Digital Library, 2008)
In this work we present a new methodology for structure and parameter estimation in cell systems biology modelling. Our ...
Tesis Doctoral
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P systems, a computacional modelling framework for systems biology

Romero Campero, Francisco José; Pérez Jiménez, Mario de Jesús; Gheorghe, Marian (2007)
"Los programas informáticos que modelizan células facilitarán el trabajo de los biólogos. Se basa en hacer modelos de ...
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Cellular modelling using P systems and process algebra.

Romero Campero, Francisco José; Gheorghe, Marian; Ciobanu, Gabriel; Auld, John M.; Pérez Jiménez, Mario de Jesús (Taylor and Francis Online, 2007)
In this paper various molecular chemical interactions are modelled under different computational paradigms. P systems and ...
Ponencia
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Simulating Apoptosis Using Discrete Methods: a Membrane System and a Stochastic Approach

Jack, John; Romero Campero, Francisco José; Pérez Jiménez, Mario de Jesús; Ibarra, Óscar H.; Paun, Andrei (2007)
Membrane Systems provide an intriguing method for modeling biological systems at a molecular level. The hierarchical ...
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A uniform solution to SAT using membrane creation

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Elsevier, 2007)
In living cells, new membranes are produced basically through two processes: mitosis and autopoiesis. These two processes have ...
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A Hybrid Approach to Modeling Biological Systems

Bernardini, Francesco; Gheorghe, Marian; Romero Campero, Francisco José; Walkinshaw, Neil (Springer, 2007)
This paper investigates a hybrid approach to modeling molecular interactions in biology. P systems, π-calculus, and Petri ...
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Simulating FAS-induced apoptosis by using P systems

Cheruku, Smitha; Paun, Andrei; Romero Campero, Francisco José; Pérez Jiménez, Mario de Jesús; Ibarra, Óscar H. (Taylor and Francis Online, 2007)
In contrast to differential equations, P systems are an unconven- tional model of computation which takes into consideration ...
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How to express tumours using membrane systems

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (ELSEVIER SCIENCE INC, 2007)
In this paper we discuss the potential usefulness of membrane systems as tools for modelling tumours. The approach is ...
Artículo
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Computational efficiency of dissolution rules in membrane systems

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (Taylor and Francis, 2006)
Trading (in polynomial time) space for time in the framework of membrane systems is not sufficient to efficiently solve ...
Capítulo de Libro
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Towards Probabilistic Model Checking on P Systems Using PRISM

Romero Campero, Francisco José; Gheorghe, Marian; Bianco, Luca; Pescini, Dario; Pérez Jiménez, Mario de Jesús; Ceterchi, Rodica (Springer, 2006)
This paper presents the use of P systems and π-calculus to model interacting molecular entities and how they are translated into a probabilistic and symbolic model checker called PRISM.
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Modeling Signal Transduction Using P Systems

Paun, Andrei; Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Springer, 2006)
Cellular signalling pathways are fundamental to the control and regulation of cell behavior. Understanding of biosignalling ...
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A Membrane Computing View on Tumours

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (2006)
In this paper we discuss about the potential usefulness of P systems as natural tools for modelling tumours. This is done ...
Capítulo de Libro
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On P Systems as a Modelling Tool for Biological Systems

Bernardini, Francesco; Gheorghe, Marian; Krasnogor, Natalio; Muniyandi, Ravie C.; Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Springer, 2006)
We introduce a variant of P systems where rules have associated a real number providing a measure for the “intrinsic ...
Capítulo de Libro
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A Linear Solution for QSAT with Membrane Creation

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Springer, 2006)
The usefulness of P systems with membrane creation for solving NP problems has been previously proved (see [2, 3]), but, ...
Capítulo de Libro
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On the Power of Dissolution in P Systems with Active Membranes

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (Springer, 2006)
In this paper we study membrane dissolution rules in the framework of P systems with active membranes but without using ...
Capítulo de Libro
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A Modeling Approach Based on P Systems with Bounded Parallelism

Bernardini, Francesco; Romero Campero, Francisco José; Gheorghe, Marian; Pérez Jiménez, Mario de Jesús (Springer, 2006)
This paper presents a general framework for modelling with membrane systems that is based on a computational paradigm ...
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Cell-like and Tissue-like Membrane Systems as Recognizer Devices

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (Rosillo's S.L., 2006)
Most of the variants of membrane systems found in the literature are generally thought as generating devices. In this paper ...
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Towards a P Systems Pseudomonas Quorum Sensing Model

Bianco, Luca; Pescini, Dario; Siepmann, Peter; Krasnogor, Natalio; Romero Campero, Francisco José; Gheorghe, Marian (Springer, 2006)
Pseudomonas aeruginosa is an opportunistic bacterium that exploits quorum sensing communication to synchronize individuals ...
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Stochastic Approaches in P Systems for Simulating Biological Systems

Cazzaniga, Paolo; Pescini, Dario; Romero Campero, Francisco José; Besozzi, Daniela; Mauri, Giancarlo (Fénix Editora, 2006)
Different stochastic strategies for modeling biological systems with P systems are reviewed in this paper, such as the ...
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P Systems, a New Computational Modelling Tool for Systems Biology

Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Springer, 2006)
In this paper we present P systems as a reliable computa- tional modelling tool for Systems Biology that takes into account ...
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Characterizing tractability by cell-like membrane systems

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José; Romero Jiménez, Álvaro (WORLD SCIENTIFIC PUBL CO PTE LTD, 2006)
In this paper we present a polynomial complexity class in the framework of membrane computing. In this context, and using ...
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Attacking the Common Algorithmic Problem by Recognizer P Systems

Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Springer, 2005)
Many NP-complete problems can be viewed as special cases of the Common Algorithmic Problem (CAP). In a precise sense, ...
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Modelling Vibrio fischeri’s behaviour Using P Systems

Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (2005)
Quorum sensing is a cell density dependent gene regulation system that allows an entire population of bacterial cells to ...
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Trading Polarization for Bi-stable Catalysts in P Systems with Active Membranes

Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Springer, 2005)
In the last time, several efforts have been made in order to remove polarizations of membranes from P systems with active ...
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A Tool for Using the SBML Format to Represent P Systems which Model Biological Reaction Networks

Nepomuceno Chamorro, Isabel de los Ángeles; Nepomuceno Chamorro, Juan Antonio; Romero Campero, Francisco José (Fénix Editora, 2005)
In this paper we present a software tool to represent P systems modelling signalling networks of biochemical reactions ...
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Solving SAT with membrane creation

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (University of Amsterdam, 2005)
Membrane Computing is a branch of Natural Computing which starts from the assumption that the processes taking place in ...
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Characterizing Tractability with Membrane Creation

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (IEEE Computer Society, 2005)
This paper analyzes the role that membrane dissolution rules play in order to characterize (in the framework of recognizer ...
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Modelling EGFR signalling cascade using continuous membrane systems

Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (2005)
The complexity of networks of biological signalling pathways is such that the development of simplifying models is essential ...
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P Systems with Active Membranes, Without Polarizations and Without Dissolution: A Characterization of P

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Riscos Núñez, Agustín; Romero Campero, Francisco José (Springer, 2005)
We study the computational efficiency of recognizer P systems with active membranes without polarizations and without ...
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A Study of the Robustness of the EGFR Signalling Cascade Using Continuous Membrane Systems

Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Springer, 2005)
Many approaches to anticancer treatment have had a limited success. A fundamental hurdle to cancer therapy is the robustness ...
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On P Systems with Bounded Parallelism

Bernardini, Francesco; Romero Campero, Francisco José; Gheorghe, Marian; Pérez Jiménez, Mario de Jesús; Margenstern, Maurice; Verlan, Sergey; Krasnogor, Natalio (IEEE Computer Society, 2005)
A framework that describes the evolution of P systems with bounded parallelism is de ned by introducing basic formal ...
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A Linear Solution of Subset Sum Problem by Using Membrane Creation

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Springer, 2005)
Membrane Computing is a branch of Natural Computing which starts from the assumption that the processes taking place in ...
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Simulating Avascular Tumors with Membrane Systems

Gutiérrez Naranjo, Miguel Ángel; Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Fénix Editora, 2005)
Tumor growth has received a considerable attention by the scientific community. In the earliest stages of development, ...
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A CLIPS Simulator for Recognizer P Systems with Active Membranes

Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Fénix Editora, 2004)
In this paper we propose a new way to represent recognizer P systems with active membranes based on Production Systems ...
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An Efficient Family of P Systems for Packing Items into Bins

Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Graz University of Technology, Institut für Informationssysteme und Computer Medie, 2004)
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Solving the BINPACKING Problem by Recognizer P Systems with Active Membranes

Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Fénix Editora, 2004)
In this paper we present an e®ective solution to the BINPACKING problem using a family of recognizer P systems with active ...