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TFMLAB: A MATLAB toolbox for 4D traction force microscopy

dc.creatorBarrasa Fano, Jorgees
dc.creatorShapeti, Apekshaes
dc.creatorJorge Peñas, Álvaroes
dc.creatorBarzegari, Mojtabaes
dc.creatorSanz Herrera, José Antonioes
dc.creatorVan Oosterwyck, Hanses
dc.date.accessioned2022-09-28T14:34:51Z
dc.date.available2022-09-28T14:34:51Z
dc.date.issued2021-07
dc.identifier.citationBarrasa Fano, J., Shapeti, A., Jorge Peñas, Á., Barzegari, M., Sanz Herrera, J.A. y Van Oosterwyck, H. (2021). TFMLAB: A MATLAB toolbox for 4D traction force microscopy. SoftwareX, 15, Article number 100723.
dc.identifier.issn2352-7110es
dc.identifier.urihttps://hdl.handle.net/11441/137436
dc.descriptionArticle number 100723es
dc.description.abstractWe present TFMLAB, a MATLAB software package for 4D (x;y;z;t) Traction Force Microscopy (TFM). While various TFM computational workflows are available in the literature, open-source programs that are easy to use by researchers with limited technical experience and that can analyze 4D in vitro systems do not exist. TFMLAB integrates all the computational steps to compute active cellular forces from confocal microscopy images, including image processing, cell segmentation, image alignment, matrix displacement measurement and force recovery. Moreover, TFMLAB eases usability by means of interactive graphical user interfaces. This work describes the package's functionalities and analyzes its performance on a real TFM casees
dc.description.sponsorshipKU Leuven 1S68818Nes
dc.description.sponsorshipFonds Wetenschappelijk Onderzoek (FWO) V413019Nes
dc.description.sponsorshipFonds Wetenschappelijk Onderzoek (FWO) G085018Nes
dc.description.sponsorshipCambridge Conservation Initiative (CCI) 2014TC16RFCB046es
dc.description.sponsorshipMinisterio de Educación, Cultura y Deporte de España CAS17/00096es
dc.description.sponsorshipMinisterio de Economía y Competitividad de España (MINECO) PGC2018-097257-B-C31es
dc.description.sponsorshipConsejo Europeo de Investigación 308223es
dc.description.sponsorshipKU Leuven C14/17/111es
dc.description.sponsorshipFonds Wetenschappelijk Onderzoek (FWO)/Hercules G0H6316Nes
dc.formatapplication/pdfes
dc.format.extent9 p.es
dc.language.isoenges
dc.publisherElsevier B.Ves
dc.relation.ispartofSoftwareX, 15, Article number 100723.
dc.rightsAttribution-NonCommercial-NoDerivatives 4.0 Internacional*
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/*
dc.subjectTraction force microscopyes
dc.subjectCell mechanicses
dc.subjectImage processinges
dc.subjectFinite element methodes
dc.titleTFMLAB: A MATLAB toolbox for 4D traction force microscopyes
dc.typeinfo:eu-repo/semantics/articlees
dc.type.versioninfo:eu-repo/semantics/publishedVersiones
dc.rights.accessRightsinfo:eu-repo/semantics/openAccesses
dc.contributor.affiliationUniversidad de Sevilla. Departamento de Mecánica de Medios Continuos y Teoría de Estructurases
dc.relation.projectID1S68818Nes
dc.relation.projectIDG085018Nes
dc.relation.projectIDV413019Nes
dc.relation.projectID2014TC16RFCB046es
dc.relation.projectIDCAS17/00096es
dc.relation.projectIDPGC2018-097257-B-C31es
dc.relation.projectID308223es
dc.relation.projectIDG0H6316Nes
dc.relation.projectIDC14/17/111es
dc.relation.publisherversionhttps://www.sciencedirect.com/science/article/pii/S2352711021000625es
dc.identifier.doi10.1016/j.softx.2021.100723es
dc.journaltitleSoftwareXes
dc.publication.volumen15es
dc.publication.initialPageArticle number 100723es
dc.contributor.funderCambridge Conservation Initiative (CCI)es
dc.contributor.funderMinisterio de Educación, Cultura y Deporte de Españaes
dc.contributor.funderMinisterio de Economía y Competitividad de España (MINECO)es
dc.contributor.funderConsejo Europeo de Investigaciónes
dc.contributor.funderFonds Wetenschappelijk Onderzoek (FWO)es
dc.contributor.funderKU Leuvenes
dc.contributor.funderHerculeses

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